LOCUS Map_TR601PB1_pTRH2 7885 bp ds-DNA circular 17-JUN-2011 SOURCE ORGANISM COMMENT This file is best viewed with a free Vector NTI Viewer: COMMENT ApEinfo:methylated:1 FEATURES Location/Qualifiers LTR 3963..4503 /vntifkey="19" /label=WPRE /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink LTR 7..234 /vntifkey="19" /label=RSV\LTR /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink misc_binding 567..919 /vntifkey="20" /label=gag /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink promoter 4947..5078 /vntifkey="30" /label=SV40\EEL\poly(A)s /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink LTR 1798..1916 /vntifkey="19" /label=cPPT /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink CDS 920..1791 /vntifkey="4" /label=RRE /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink promoter 235..414 /vntifkey="30" /label=HIV\LTR /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink promoter 5087..5233 /vntifkey="30" /label=SV40\Ori /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink promoter 4642..4875 /vntifkey="30" /label=3'dLTR /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink CDS complement(6421..7281) /vntifkey="4" /label=AmpR /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink misc_feature 5662..5662 /vntifkey="21" /label=ORI /ApEinfo_fwdcolor=#ff00ff /ApEinfo_revcolor=#c0c0c0 misc_feature 5221..5226 /vntifkey="21" /label=AvrII/XbaI /ApEinfo_fwdcolor=#ff00ff /ApEinfo_revcolor=#c0c0c0 misc_feature 5239..5244 /vntifkey="21" /label=EagI/ApaI /ApEinfo_fwdcolor=#ff00ff /ApEinfo_revcolor=#c0c0c0 misc_feature 5234..5238 /vntifkey="21" /label=insert /ApEinfo_fwdcolor=#ff00ff /ApEinfo_revcolor=#c0c0c0 rep_origin complement(5603..6276) /vntifkey="33" /label=pUC\ORI /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink promoter 1917..2266 /vntifkey="29" /label=CMV /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink CDS 2302..3954 /vntifkey="4" /label=Luciferase\(2) /ApEinfo_fwdcolor=pink /ApEinfo_revcolor=pink ORIGIN 1 acgcgtgtag tcttatgcaa tactcttgta gtcttgcaac atggtaacga tgagttagca 61 acatgcctta caaggagaga aaaagcaccg tgcatgccga ttggtggaag taaggtggta 121 cgatcgtgcc ttattaggaa ggcaacagac gggtctgaca tggattggac gaaccactga 181 attgccgcat tgcagagata ttgtatttaa gtgcctagct cgatacaata aacgggtctc 241 tctggttaga ccagatctga gcctgggagc tctctggcta actagggaac ccactgctta 301 agcctcaata aagcttgcct tgagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact 361 ctggtaacta gagatccctc agaccctttt agtcagtgtg gaaaatctct agcagtggcg 421 cccgaacagg gacctgaaag cgaaagggaa accagagctc tctcgacgca ggactcggct 481 tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt 541 gactagcgga ggctagaagg agagagatgg gtgcgagagc gtcagtatta agcgggggag 601 aattagatcg cgatgggaaa aaattcggtt aaggccaggg ggaaagaaaa aatataaatt 661 aaaacatata gtatgggcaa gcagggagct agaacgattc gcagttaatc ctggcctgtt 721 agaaacatca gaaggctgta gacaaatact gggacagcta caaccatccc ttcagacagg 781 atcagaagaa cttagatcat tatataatac agtagcaacc ctctattgtg tgcatcaaag 841 gatagagata aaagacacca aggaagcttt agacaagata gaggaagagc aaaacaaaag 901 taagaccacc gcacagcaag cggccgctga tcttcagacc tggaggagga gatatgaggg 961 acaattggag aagtgaatta tataaatata aagtagtaaa aattgaacca ttaggagtag 1021 cacccaccaa ggcaaagaga agagtggtgc agagagaaaa aagagcagtg ggaataggag 1081 ctttgttcct tgggttcttg ggagcagcag gaagcactat gggcgcagcc tcaatgacgc 1141 tgacggtaca ggccagacaa ttattgtctg gtatagtgca gcagcagaac aatttgctga 1201 gggctattga ggcgcaacag catctgttgc aactcacagt ctggggcatc aagcagctcc 1261 aggcaagaat cctggctgtg gaaagatacc taaaggatca acagctcctg gggatttggg 1321 gttgctctgg aaaactcatt tgcaccactg ctgtgccttg gaatgctagt tggagtaata 1381 aatctctgga acagattgga atcacacgac ctggatggag tgggacagag aaattaacaa 1441 ttacacaagc ttaatacact ccttaattga agaatcgcaa aaccagcaag aaaagaatga 1501 acaagaatta ttggaattag ataaatgggc aagtttgtgg aattggttta acataacaaa 1561 ttggctgtgg tatataaaat tattcataat gatagtagga ggcttggtag gtttaagaat 1621 agtttttgct gtactttcta tagtgaatag agttaggcag ggatattcac cattatcgtt 1681 tcagacccac ctcccaaccc cgaggggacc cgacaggccc gaaggaatag aagaagaagg 1741 tggagagaga gacagagaca gatccattcg attagtgaac ggatctcgac ggttaacttt 1801 taaaagaaaa ggggggattg gggggtacag tgcaggggaa agaatagtag acataatagc 1861 aacagacata caaactaaag aattacaaaa acaaattaca aaaattcaaa attttatcga 1921 tgaattcgcc cagtacatga ccttatggga ctttcctact tggcagtaca tctacgtatt 1981 agtcatcgct attaccatgg tgatgcggtt ttggcagtac atcaatgggc gtggatagcg 2041 gtttgactca cggggatttc caagtctcca ccccattgac gtcaatggga gtttgttttg 2101 gcaccaaaat caacgggact ttccaaaatg tcgtaacaac tccgccccat tgacgcaaat 2161 gggactagtt aggcgtgtac ggtgggaggt ctatataagc agagctcgtt tagtgaaccg 2221 tcagatcgcc tggagacgcc atccacgctg ttttgacctc catagaagac accgggaccg 2281 atccagcctc tcggatccga catggaagac gccaaaaaca taaagaaagg cccggcgcca 2341 ttctatcctc tagaggatgg aaccgctgga gagcaactgc ataaggctat gaagagatac 2401 gccctggttc ctggaacaat tgcttttaca gatgcacata tcgaggtgaa catcacgtac 2461 gcggaatact tcgaaatgtc cgttcggttg gcagaagcta tgaaacgata tgggctgaat 2521 acaaatcaca gaatcgtcgt atgcagtgaa aactctcttc aattctttat gccggtgtta 2581 ggcgcgttat ttatcggagt tgcagttgcg cccgcgaacg acatttataa tgaacgtgaa 2641 ttgctcaaca gtatgaacat ttcgcagcct accgtagtgt ttgtttccaa aaaggggttg 2701 caaaaaattt tgaacgtgca aaaaaaatta ccaataatcc agaaaattat tatcatggat 2761 tctaaaacgg attaccaggg atttcagtcg atgtacacgt tcgtcacatc tcatctacct 2821 cccggtttta atgaatacga ttttgtacca gagtcctttg atcgtgacaa aacaattgca 2881 ctgataatga actcctctgg atctactggg ttacctaagg gtgtggccct tccgcataga 2941 actgcctgcg tcagattctc gcatgccaga gatcctattt ttggcaatca aatcattccg 3001 gatactgcga ttttaagtgt tgttccattc catcacggtt ttggaatgtt tactacactc 3061 ggatatttga tatgtggatt tcgagtcgtc ttaatgtata gatttgaaga agagctgttt 3121 ttacgatccc ttcaggatta caaaattcaa agtgcgttgc tagtaccaac cctattttca 3181 ttcttcgcca aaagcactct gattgacaaa tacgatttat ctaatttaca cgaaattgct 3241 tctgggggcg cacctctttc gaaagaagtc ggggaagcgg ttgcaaaacg cttccatctt 3301 ccagggatac gacaaggata tgggctcact gagactacat cagctattct gattacaccc 3361 gagggggatg ataaaccggg cgcggtcggt aaagttgttc cattttttga agcgaaggtt 3421 gtggatctgg ataccgggaa aacgctgggc gttaatcaga gaggcgaatt atgtgtcaga 3481 ggacctatga ttatgtccgg ttatgtaaac aatccggaag cgaccaacgc cttgattgac 3541 aaggatggat ggctacattc tggagacata gcttactggg acgaagacga acacttcttc 3601 atagttgacc gcttgaagtc tttaattaaa tacaaaggat atcaggtggc ccccgctgaa 3661 ttggaatcga tattgttaca acaccccaac atcttcgacg cgggcgtggc aggtcttccc 3721 gacgatgacg ccggtgaact tcccgccgcc gttgttgttt tggagcacgg aaagacgatg 3781 acggaaaaag agatcgtgga ttacgtcgcc agtcaagtaa caaccgccaa aaagttgcgc 3841 ggaggagttg tgtttgtgga cgaagtaccg aaaggtctta ccggaaaact cgacgcaaga 3901 aaaatcagag agatcctcat aaaggccaag aagggcggaa agtccaaatt gtaatagtcg 3961 acaatcaacc tctggattac aaaatttgtg aaagattgac tggtattctt aactatgttg 4021 ctccttttac gctatgtgga tacgctgctt taatgccttt gtatcatgct attgcttccc 4081 gtatggcttt cattttctcc tccttgtata aatcctggtt gctgtctctt tatgaggagt 4141 tgtggcccgt tgtcaggcaa cgtggcgtgg tgtgcactgt gtttgctgac gcaaccccca 4201 ctggttgggg cattgccacc acctgtcagc tcctttccgg gactttcgct ttccccctcc 4261 ctattgccac ggcggaactc atcgccgcct gccttgcccg ctgctggaca ggggctcggc 4321 tgttgggcac tgacaattcc gtggtgttgt cggggaagct gacgtccttt ccatggctgc 4381 tcgcctgtgt tgccacctgg attctgcgcg ggacgtcctt ctgctacgtc ccttcggccc 4441 tcaatccagc ggaccttcct tcccgcggcc tgctgccggc tctgcggcct cttccgcatc 4501 ttcgccttcg ccctcagacg agtcggatct ccctttgggc cgcctccccg cctggaatta 4561 attcgagctc ggtaccttta agaccaatga cttacaaggc agctgtagat cttagccact 4621 ttttaaaaga aaagggggga ctggaagggc taattcactc ccaacgaaaa taagatctgc 4681 tttttgcttg tactgggtct ctctggttag accagatctg agcctgggag ctctctggct 4741 aactagggaa cccactgctt aagcctcaat aaagcttgcc ttgagtgctt caagtagtgt 4801 gtgcccgtct gttgtgtgac tctggtaact agagatccct cagacccttt tagtcagtgt 4861 ggaaaatctc tagcagtagt agttcatgtc atcttattat tcagtattta taacttgcaa 4921 agaaatgaat atcagagagt gagaggaact tgtttattgc agcttataat ggttacaaat 4981 aaagcaatag catcacaaat ttcacaaata aagcattttt ttcactgcat tctagttgtg 5041 gtttgtccaa actcatcaat gtatcttatc atgtctggct ctagctatcc cgcccctaac 5101 tccgcccagt tccgcccatt ctccgcccca tggctgacta atttttttta tttatgcaga 5161 ggccgaggcc gcctcggcct ctgagctatt ccagaagtag tgaggaggct tttttggagg 5221 cctagacttt tgcagagacg gcccaaattc gtaatcatgg tcatagctgt ttcctgtgtg 5281 aaattgttat ccgctcacaa ttccacacaa catacgagcc ggaagcataa agtgtaaagc 5341 ctggggtgcc taatgagtga gctaactcac attaattgcg ttgcgctcac tgcccgcttt 5401 ccagtcggga aacctgtcgt gccagctgca ttaatgaatc ggccaacgcg cggggagagg 5461 cggtttgcgt attgggcgct cttccgcttc ctcgctcact gactcgctgc gctcggtcgt 5521 tcggctgcgg cgagcggtat cagctcactc aaaggcggta atacggttat ccacagaatc 5581 aggggataac gcaggaaaga acatgtgagc aaaaggccag caaaaggcca ggaaccgtaa 5641 aaaggccgcg ttgctggcgt ttttccatag gctccgcccc cctgacgagc atcacaaaaa 5701 tcgacgctca agtcagaggt ggcgaaaccc gacaggacta taaagatacc aggcgtttcc 5761 ccctggaagc tccctcgtgc gctctcctgt tccgaccctg ccgcttaccg gatacctgtc 5821 cgcctttctc ccttcgggaa gcgtggcgct ttctcatagc tcacgctgta ggtatctcag 5881 ttcggtgtag gtcgttcgct ccaagctggg ctgtgtgcac gaaccccccg ttcagcccga 5941 ccgctgcgcc ttatccggta actatcgtct tgagtccaac ccggtaagac acgacttatc 6001 gccactggca gcagccactg gtaacaggat tagcagagcg aggtatgtag gcggtgctac 6061 agagttcttg aagtggtggc ctaactacgg ctacactaga aggacagtat ttggtatctg 6121 cgctctgctg aagccagtta ccttcggaaa aagagttggt agctcttgat ccggcaaaca 6181 aaccaccgct ggtagcggtg gtttttttgt ttgcaagcag cagattacgc gcagaaaaaa 6241 aggatctcaa gaagatcctt tgatcttttc tacggggtct gacgctcagt ggaacgaaaa 6301 ctcacgttaa gggattttgg tcatgagatt atcaaaaagg atcttcacct agatcctttt 6361 aaattaaaaa tgaagtttta aatcaatcta aagtatatat gagtaaactt ggtctgacag 6421 ttaccaatgc ttaatcagtg aggcacctat ctcagcgatc tgtctatttc gttcatccat 6481 agttgcctga ctccccgtcg tgtagataac tacgatacgg gagggcttac catctggccc 6541 cagtgctgca atgataccgc gagacccacg ctcaccggct ccagatttat cagcaataaa 6601 ccagccagcc ggaagggccg agcgcagaag tggtcctgca actttatccg cctccatcca 6661 gtctattaat tgttgccggg aagctagagt aagtagttcg ccagttaata gtttgcgcaa 6721 cgttgttgcc attgctacag gcatcgtggt gtcacgctcg tcgtttggta tggcttcatt 6781 cagctccggt tcccaacgat caaggcgagt tacatgatcc cccatgttgt gcaaaaaagc 6841 ggttagctcc ttcggtcctc cgatcgttgt cagaagtaag ttggccgcag tgttatcact 6901 catggttatg gcagcactgc ataattctct tactgtcatg ccatccgtaa gatgcttttc 6961 tgtgactggt gagtactcaa ccaagtcatt ctgagaatag tgtatgcggc gaccgagttg 7021 ctcttgcccg gcgtcaatac gggataatac cgcgccacat agcagaactt taaaagtgct 7081 catcattgga aaacgttctt cggggcgaaa actctcaagg atcttaccgc tgttgagatc 7141 cagttcgatg taacccactc gtgcacccaa ctgatcttca gcatctttta ctttcaccag 7201 cgtttctggg tgagcaaaaa caggaaggca aaatgccgca aaaaagggaa taagggcgac 7261 acggaaatgt tgaatactca tactcttcct ttttcaatat tattgaagca tttatcaggg 7321 ttattgtctc atgagcggat acatatttga atgtatttag aaaaataaac aaataggggt 7381 tccgcgcaca tttccccgaa aagtgccacc tgacgtctaa gaaaccatta ttatcatgac 7441 attaacctat aaaaataggc gtatcacgag gccctttcgt ctcgcgcgtt tcggtgatga 7501 cggtgaaaac ctctgacaca tgcagctccc ggagacggtc acagcttgtc tgtaagcgga 7561 tgccgggagc agacaagccc gtcagggcgc gtcagcgggt gttggcgggt gtcggggctg 7621 gcttaactat gcggcatcag agcagattgt actgagagtg caccatatgc ggtgtgaaat 7681 accgcacaga tgcgtaagga gaaaataccg catcaggcgc cattcgccat tcaggctgcg 7741 caactgttgg gaagggcgat cggtgcgggc ctcttcgcta ttacgccagc tggcgaaagg 7801 gggatgtgct gcaaggcgat taagttgggt aacgccaggg ttttcccagt cacgacgttg 7861 taaaacgacg gccagtgcca agctg //